IL_8IFD_119

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8IFD|1|1A|A|3785, 8IFD|1|1A|C|3791, 8IFD|1|1A|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_119 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1279

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8IFD|1|1A|C|3781
8IFD|1|1A|C|3782
8IFD|1|1A|A|3783
8IFD|1|1A|A|3784
8IFD|1|1A|A|3785
8IFD|1|1A|U|3786
8IFD|1|1A|G|3787
8IFD|1|1A|C|3788
8IFD|1|1A|C|3789
8IFD|1|1A|U|3790
8IFD|1|1A|C|3791
8IFD|1|1A|G|3792
*
8IFD|1|1A|C|3808
8IFD|1|1A|G|3809
8IFD|1|1A|C|3810
8IFD|1|1A|G|3811

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2m

Small subunit ribosomal RNA; SSU rRNA