IL_8IFD_140

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|4466
8IFD|1|1A|A|4467
8IFD|1|1A|U|4468
8IFD|1|1A|U|4469
8IFD|1|1A|G|4470
*
8IFD|1|1A|C|4485
8IFD|1|1A|C|4486
8IFD|1|1A|A|4487
8IFD|1|1A|A|4488
8IFD|1|1A|G|4489
8IFD|1|1A|C|4490
8IFD|1|1A|G|4491

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2C

60S ribosomal protein L9

Chain 2I

60S ribosomal protein L13a

Chain 2P

60S ribosomal protein L23

Chain 2g

Large ribosomal subunit protein eL40