IL_8IFD_151

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8IFD|1|1A|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_151 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2307

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8IFD|1|1A|G|4680
8IFD|1|1A|A|4681
8IFD|1|1A|U|4682
8IFD|1|1A|U|4683
8IFD|1|1A|A|4684
8IFD|1|1A|U|4685
*
8IFD|1|1A|A|4705
8IFD|1|1A|G|4706
8IFD|1|1A|A|4707
8IFD|1|1A|A|4708
8IFD|1|1A|U|4709
8IFD|1|1A|C|4710

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2I

60S ribosomal protein L13a

Chain 2g

Large ribosomal subunit protein eL40