IL_8IFD_173

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_173 not in the Motif Atlas

Homologous match to IL_8C3A_393

Geometric discrepancy: 0.1968

The information below is about IL_8C3A_393

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8IFD|1|2m|U|34
8IFD|1|2m|C|35
8IFD|1|2m|U|36
*
8IFD|1|2m|A|519
8IFD|1|2m|A|520
8IFD|1|2m|A|521

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9