IL_8IFD_175
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 8IFD|1|2m|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_175 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.0984
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8IFD|1|2m|G|41
8IFD|1|2m|A|42
8IFD|1|2m|U|43
8IFD|1|2m|U|44
8IFD|1|2m|A|45
8IFD|1|2m|A|46
8IFD|1|2m|G|47
*
8IFD|1|2m|C|479
8IFD|1|2m|G|480
8IFD|1|2m|C|481
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 3B
- 40S ribosomal protein S23
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