IL_8IFD_184
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8IFD|1|2m|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_184 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.1426
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IFD|1|2m|G|145
8IFD|1|2m|G|146
8IFD|1|2m|A|147
8IFD|1|2m|U|148
8IFD|1|2m|A|149
8IFD|1|2m|A|150
8IFD|1|2m|C|151
*
8IFD|1|2m|G|167
8IFD|1|2m|C|168
8IFD|1|2m|U|169
8IFD|1|2m|A|170
8IFD|1|2m|A|171
8IFD|1|2m|U|172
8IFD|1|2m|A|173
8IFD|1|2m|C|174
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2Q
- 60S ribosomal protein L24
- Chain 3H
- 40S ribosomal protein S6
- Chain 3N
- 40S ribosomal protein S24
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