IL_8IFD_204

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8IFD|1|2m|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_204 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1178

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8IFD|1|2m|G|665
8IFD|1|2m|U|666
8IFD|1|2m|U|667
8IFD|1|2m|A|668
8IFD|1|2m|A|669
8IFD|1|2m|A|670
8IFD|1|2m|A|671
*
8IFD|1|2m|U|1161
8IFD|1|2m|C|1162

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3C

40S ribosomal protein S26