IL_8IFD_226

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

8IFD|1|2m|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_226 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2331

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8IFD|1|2m|G|1203
8IFD|1|2m|A|1204
8IFD|1|2m|C|1205
*
8IFD|1|2m|G|1693
8IFD|1|2m|U|1694
8IFD|1|2m|A|1695
8IFD|1|2m|C|1696

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3C

40S ribosomal protein S26

Chain 3G

40S ribosomal protein S2