IL_8IFD_231

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_231 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.2404

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8IFD|1|2m|G|1235
8IFD|1|2m|G|1236
*
8IFD|1|2m|C|1521
8IFD|1|2m|A|1522
8IFD|1|2m|C|1523

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2w

40S ribosomal protein S15

Chain 2z

40S ribosomal protein S18