IL_8IFD_254

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8IFD|1|2m|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_254 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.1854

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8IFD|1|2m|U|1720
8IFD|1|2m|U|1721
8IFD|1|2m|G|1722
*
8IFD|1|2m|U|1812
8IFD|1|2m|A|1813

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2P

60S ribosomal protein L23

Chain 2h

60S ribosomal protein L41

Chain 3B

40S ribosomal protein S23