IL_8IFE_007

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

8IFE|1|1A|G|119, 8IFE|1|1A|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|C|118
8IFE|1|1A|G|119
8IFE|1|1A|A|120
8IFE|1|1A|A|121
8IFE|1|1A|U|122
*
8IFE|1|1A|A|147
8IFE|1|1A|C|148
8IFE|1|1A|A|149
8IFE|1|1A|U|150
8IFE|1|1A|G|151
8IFE|1|1A|U|152
8IFE|1|1A|G|153

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2B

60S ribosomal protein L7a

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35