IL_8IFE_022

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8IFE|1|1A|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|A|466
8IFE|1|1A|U|467
8IFE|1|1A|U|468
8IFE|1|1A|C|469
8IFE|1|1A|A|470
8IFE|1|1A|A|471
8IFE|1|1A|C|472
*
8IFE|1|1A|G|682
8IFE|1|1A|C|683
8IFE|1|1A|G|684
8IFE|1|1A|C|685
8IFE|1|1A|A|686
8IFE|1|1A|U|687
8IFE|1|1A|U|688
8IFE|1|1A|U|689

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2k

60S ribosomal protein L28