IL_8IFE_037

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_037 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1535

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8IFE|1|1A|G|752
8IFE|1|1A|C|753
8IFE|1|1A|U|754
*
8IFE|1|1A|A|909
8IFE|1|1A|G|910
8IFE|1|1A|U|911

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2M

60S ribosomal protein L18a