IL_8IFE_041

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8IFE|1|1A|C|1214, 8IFE|1|1A|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_041 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.3895

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8IFE|1|1A|C|1082
8IFE|1|1A|U|1083
8IFE|1|1A|C|1084
*
8IFE|1|1A|G|1213
8IFE|1|1A|C|1214
8IFE|1|1A|C|1215
8IFE|1|1A|C|1216
8IFE|1|1A|G|1217

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2A

60S ribosomal protein L7

Chain 2V

60S ribosomal protein L29