IL_8IFE_044

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_044 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.1807

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8IFE|1|1A|G|1094
8IFE|1|1A|A|1095
8IFE|1|1A|C|1096
*
8IFE|1|1A|G|1199
8IFE|1|1A|G|1200
8IFE|1|1A|U|1201

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2M

60S ribosomal protein L18a

Chain 2N

60S ribosomal protein L21