IL_8IFE_106

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8IFE|1|1A|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_106 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0718

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8IFE|1|1A|A|2850
8IFE|1|1A|G|2851
8IFE|1|1A|U|2852
8IFE|1|1A|C|2853
8IFE|1|1A|G|2854
8IFE|1|1A|G|2855
*
8IFE|1|1A|C|3837
8IFE|1|1A|U|3838
8IFE|1|1A|G|3839
8IFE|1|1A|U|3840

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2P

60S ribosomal protein L23