IL_8IFE_107

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8IFE|1|1A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_107 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0592

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8IFE|1|1A|C|2867
8IFE|1|1A|G|2868
8IFE|1|1A|U|2869
8IFE|1|1A|A|2870
8IFE|1|1A|A|2871
8IFE|1|1A|C|2872
*
8IFE|1|1A|G|2877
8IFE|1|1A|G|2878
8IFE|1|1A|A|2879
8IFE|1|1A|U|2880
8IFE|1|1A|A|2881
8IFE|1|1A|A|2882
8IFE|1|1A|G|2883

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2j

60S ribosomal protein L37a

Chain 2m

Small subunit ribosomal RNA; SSU rRNA