IL_8IFE_113

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8IFE|1|1A|A|3746, 8IFE|1|1A|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_113 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0826

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8IFE|1|1A|U|3704
8IFE|1|1A|G|3705
*
8IFE|1|1A|U|3745
8IFE|1|1A|A|3746
8IFE|1|1A|A|3747
8IFE|1|1A|A|3748

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8