IL_8IFE_118

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8IFE|1|1A|A|3785, 8IFE|1|1A|C|3791, 8IFE|1|1A|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_118 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1571

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8IFE|1|1A|C|3781
8IFE|1|1A|C|3782
8IFE|1|1A|A|3783
8IFE|1|1A|A|3784
8IFE|1|1A|A|3785
8IFE|1|1A|U|3786
8IFE|1|1A|G|3787
8IFE|1|1A|C|3788
8IFE|1|1A|C|3789
8IFE|1|1A|U|3790
8IFE|1|1A|C|3791
8IFE|1|1A|G|3792
*
8IFE|1|1A|C|3808
8IFE|1|1A|G|3809
8IFE|1|1A|C|3810
8IFE|1|1A|G|3811

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2m

Small subunit ribosomal RNA; SSU rRNA