IL_8IFE_148

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_148 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2498

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8IFE|1|1A|U|4632
8IFE|1|1A|G|4633
8IFE|1|1A|U|4634
8IFE|1|1A|A|4635
8IFE|1|1A|U|4636
8IFE|1|1A|G|4637
*
8IFE|1|1A|C|4662
8IFE|1|1A|G|4663
8IFE|1|1A|A|4664
8IFE|1|1A|A|4665
8IFE|1|1A|G|4666

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2Q

60S ribosomal protein L24

Chain 2X

60S ribosomal protein L31