IL_8IFE_183

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8IFE|1|2m|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_183 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1271

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8IFE|1|2m|G|145
8IFE|1|2m|G|146
8IFE|1|2m|A|147
8IFE|1|2m|U|148
8IFE|1|2m|A|149
8IFE|1|2m|A|150
8IFE|1|2m|C|151
*
8IFE|1|2m|G|167
8IFE|1|2m|C|168
8IFE|1|2m|U|169
8IFE|1|2m|A|170
8IFE|1|2m|A|171
8IFE|1|2m|U|172
8IFE|1|2m|A|173
8IFE|1|2m|C|174

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 3H

40S ribosomal protein S6

Chain 3N

40S ribosomal protein S24