IL_8IFE_196

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

8IFE|1|2m|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_196 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1974

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8IFE|1|2m|A|528
8IFE|1|2m|A|529
8IFE|1|2m|U|530
*
8IFE|1|2m|A|554
8IFE|1|2m|A|555
8IFE|1|2m|U|556
8IFE|1|2m|U|557

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30