IL_8IFE_199

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UCCA*UCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_199 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.3756

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8IFE|1|2m|U|566
8IFE|1|2m|C|567
8IFE|1|2m|C|568
8IFE|1|2m|A|569
*
8IFE|1|2m|U|581
8IFE|1|2m|C|582
8IFE|1|2m|C|583
8IFE|1|2m|G|584

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24