IL_8IFE_205

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_205 not in the Motif Atlas

Homologous match to IL_8C3A_428

Geometric discrepancy: 0.089

The information below is about IL_8C3A_428

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8IFE|1|2m|C|676
8IFE|1|2m|G|677
8IFE|1|2m|U|678
8IFE|1|2m|A|679
8IFE|1|2m|G|680
*
8IFE|1|2m|U|1025
8IFE|1|2m|C|1026
8IFE|1|2m|A|1027
8IFE|1|2m|A|1028
8IFE|1|2m|G|1029

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2v

40S ribosomal protein S11

Chain 3B

40S ribosomal protein S23

Chain 3K

40S ribosomal protein S13

Chain 3M

40S ribosomal protein S15a