IL_8IFE_206

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_206 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.144

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8IFE|1|2m|A|802
8IFE|1|2m|C|803
*
8IFE|1|2m|G|860
8IFE|1|2m|A|861
8IFE|1|2m|A|862
8IFE|1|2m|U|863

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2s

40S ribosomal protein S7

Chain 2v

40S ribosomal protein S11

Chain 3M

40S ribosomal protein S15a