IL_8IFE_217

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8IFE|1|2m|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_217 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1851

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8IFE|1|2m|G|952
8IFE|1|2m|C|953
8IFE|1|2m|U|954
8IFE|1|2m|A|955
8IFE|1|2m|G|956
*
8IFE|1|2m|C|967
8IFE|1|2m|U|968
8IFE|1|2m|U|969
8IFE|1|2m|G|970
8IFE|1|2m|G|971
8IFE|1|2m|A|972
8IFE|1|2m|C|973
8IFE|1|2m|C|974

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2o

40S ribosomal protein S3a

Chain 3L

40S ribosomal protein S14