IL_8IFE_222

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_222 not in the Motif Atlas

Geometric match to IL_1MFQ_003

Geometric discrepancy: 0.2129

The information below is about IL_1MFQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8IFE|1|2m|U|1101
8IFE|1|2m|G|1102
8IFE|1|2m|C|1103
*
8IFE|1|2m|G|1129
8IFE|1|2m|G|1130
8IFE|1|2m|G|1131

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2o

40S ribosomal protein S3a

Chain 2y

40S ribosomal protein S17

Chain 3C

40S ribosomal protein S26

Chain 3K

40S ribosomal protein S13

Chain 3P

40S ribosomal protein S27