IL_8IFE_239

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_239 not in the Motif Atlas

Geometric match to IL_4M6D_011

Geometric discrepancy: 0.3836

The information below is about IL_4M6D_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8IFE|1|2m|C|1399
8IFE|1|2m|U|1400
8IFE|1|2m|A|1401
*
8IFE|1|2m|U|1445
8IFE|1|2m|A|1446
8IFE|1|2m|G|1447

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16

Chain 3F

Receptor of activated protein C kinase 1