IL_8IFE_253

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_253 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1277

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8IFE|1|2m|C|1717
8IFE|1|2m|G|1718
8IFE|1|2m|A|1719
8IFE|1|2m|U|1720
*
8IFE|1|2m|A|1813
8IFE|1|2m|G|1814
8IFE|1|2m|A|1815
8IFE|1|2m|G|1816

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2P

60S ribosomal protein L23

Chain 2h

60S ribosomal protein L41