IL_8IFE_261

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCCG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_261 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.3138

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8IFE|1|1A|G|179
8IFE|1|1A|C|180
8IFE|1|1A|C|181
8IFE|1|1A|G|182
*
8IFE|1|1A|C|255
8IFE|1|1A|G|256
8IFE|1|1A|C|257

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13

Chain 2b

60S ribosomal protein L35