IL_8IFE_274

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_274 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.1009

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8IFE|1|2m|G|928
8IFE|1|2m|G|929
8IFE|1|2m|C|930
8IFE|1|2m|C|931
*
8IFE|1|2m|G|1010
8IFE|1|2m|A|1011
8IFE|1|2m|A|1012
8IFE|1|2m|U|1013

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2o

40S ribosomal protein S3a

Chain 3K

40S ribosomal protein S13

Chain 3P

40S ribosomal protein S27