IL_8INE_011

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGCG,CGCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_011 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3153

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8INE|1|2|G|176
8INE|1|2|G|177
8INE|1|2|C|178
8INE|1|2|G|179
*
8INE|1|2|C|257
8INE|1|2|G|258
8INE|1|2|C|259
8INE|1|2|C|260

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain Q

60S ribosomal protein L13