IL_8INE_082

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8INE|1|2|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_082 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.3825

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8INE|1|2|U|1957
8INE|1|2|A|1958
8INE|1|2|U|1959
8INE|1|2|A|1960
8INE|1|2|G|1961
8INE|1|2|A|1962
8INE|1|2|C|1963
8INE|1|2|A|1964
8INE|1|2|G|1965
*
8INE|1|2|C|2022
8INE|1|2|C|2023
8INE|1|2|G|2024
8INE|1|2|A|2025
8INE|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog

Chain R

Translation machinery-associated protein 16

Chain b

60S ribosomal protein L18a