IL_8INE_084

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8INE|1|2|G|1975

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_084 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.2559

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8INE|1|2|G|1973
8INE|1|2|U|1974
8INE|1|2|G|1975
8INE|1|2|G|1976
8INE|1|2|C|1977
*
8INE|1|2|G|1989
8INE|1|2|A|1990
8INE|1|2|A|1991
8INE|1|2|U|1992
8INE|1|2|C|1993

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

G Protein Nucleolar 2

Chain J

mRNA turnover protein 4 homolog

Chain y

60S ribosomal protein L12