3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAG*CGUG
Length
7 nucleotides
Bulged bases
8INE|1|2|U|2687
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_102 not in the Motif Atlas
Geometric match to IL_4V9F_076
Geometric discrepancy: 0.1333
The information below is about IL_4V9F_076
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_87316.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
12

Unit IDs

8INE|1|2|C|2646
8INE|1|2|A|2647
8INE|1|2|G|2648
*
8INE|1|2|C|2685
8INE|1|2|G|2686
8INE|1|2|U|2687
8INE|1|2|G|2688

Current chains

Chain 2
28S rRNA

Nearby chains

Chain F
60S ribosomal protein L34
Chain w
Ribosome biogenesis protein NOP53

Coloring options:


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