IL_8INE_115

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8INE|1|2|A|3663, 8INE|1|2|U|3679, 8INE|1|2|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_115 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1157

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8INE|1|2|C|3660
8INE|1|2|G|3661
8INE|1|2|A|3662
8INE|1|2|A|3663
8INE|1|2|G|3664
8INE|1|2|G|3665
*
8INE|1|2|U|3677
8INE|1|2|G|3678
8INE|1|2|U|3679
8INE|1|2|U|3680
8INE|1|2|G|3681
8INE|1|2|A|3682
8INE|1|2|C|3683
8INE|1|2|G|3684

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8