IL_8INE_119

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INE_119 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.2206

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8INE|1|2|U|3715
8INE|1|2|C|3716
8INE|1|2|A|3717
8INE|1|2|A2M|3718
8INE|1|2|A|3719
8INE|1|2|G|3720
8INE|1|2|U|3721
*
8INE|1|2|A|3732
8INE|1|2|A|3733
8INE|1|2|U|3734
8INE|1|2|G|3735
8INE|1|2|A|3736
8INE|1|2|A|3737
8INE|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain W

60S ribosomal protein L36a

Chain m

60S ribosomal protein L8