3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGC*GGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_143 not in the Motif Atlas
Geometric match to IL_3ICQ_003
Geometric discrepancy: 0.1744
The information below is about IL_3ICQ_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70707.3
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
70

Unit IDs

8INE|1|2|U|4580
8INE|1|2|G|4581
8INE|1|2|C|4582
*
8INE|1|2|G|4721
8INE|1|2|G|4722
8INE|1|2|A|4723

Current chains

Chain 2
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain V
60S ribosomal protein L13a

Coloring options:


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