3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
(OMG)A(A2M)AG*CUAGUAGC
Length
13 nucleotides
Bulged bases
8INE|1|2|A|1650, 8INE|1|2|G|1654
QA status
Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_179 not in the Motif Atlas
Homologous match to IL_8C3A_030
Geometric discrepancy: 0.1253
The information below is about IL_8C3A_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_17470.7
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8INE|1|2|OMG|1522
8INE|1|2|A|1523
8INE|1|2|A2M|1524
8INE|1|2|A|1525
8INE|1|2|G|1526
*
8INE|1|2|C|1648
8INE|1|2|U|1649
8INE|1|2|A|1650
8INE|1|2|G|1651
8INE|1|2|U|1652
8INE|1|2|A|1653
8INE|1|2|G|1654
8INE|1|2|C|1655

Current chains

Chain 2
28S rRNA

Nearby chains

Chain D
60S ribosomal protein L4
Chain L
60S ribosomal protein L27a
Chain M
60S ribosomal protein L37
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15

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