3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CC*GCG
Length
5 nucleotides
Bulged bases
8INF|1|8|C|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_001 not in the Motif Atlas
Homologous match to IL_8C3A_002
Geometric discrepancy: 0.2082
The information below is about IL_8C3A_002
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

8INF|1|2|C|6
8INF|1|2|C|7
*
8INF|1|8|G|149
8INF|1|8|C|150
8INF|1|8|G|151

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain G
60S ribosomal protein L7a
Chain U
60S ribosomal protein L15
Chain g
60S ribosomal protein L23a
Chain v
Pescadillo homolog
Chain w
Ribosome biogenesis protein NOP53

Coloring options:


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