IL_8INF_019

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8INF|1|2|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_019 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.297

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8INF|1|2|G|443
8INF|1|2|G|444
8INF|1|2|U|445
8INF|1|2|C|446
*
8INF|1|2|G|1300
8INF|1|2|C|1301
8INF|1|2|U|1302
8INF|1|2|A|1303
8INF|1|2|C|1304

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Uncharacterized protein C11orf98

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a