IL_8INF_024

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8INF|1|2|G|483, 8INF|1|2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_024 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2759

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8INF|1|2|G|482
8INF|1|2|G|483
8INF|1|2|U|484
8INF|1|2|C|485
*
8INF|1|2|G|671
8INF|1|2|C|672

Current chains

Chain 2

28S rRNA

Nearby chains