IL_8INF_027

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8INF|1|2|C|501, 8INF|1|2|C|502, 8INF|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_027 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2454

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8INF|1|2|G|500
8INF|1|2|C|501
8INF|1|2|C|502
8INF|1|2|C|503
8INF|1|2|G|504
8INF|1|2|G|505
*
8INF|1|2|U|653
8INF|1|2|C|654

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18