3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAC*GGUCG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_045 not in the Motif Atlas
Geometric match to IL_7VYX_002
Geometric discrepancy: 0.3177
The information below is about IL_7VYX_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8INF|1|2|C|1093
8INF|1|2|G|1094
8INF|1|2|A|1095
8INF|1|2|C|1096
*
8INF|1|2|G|1199
8INF|1|2|G|1200
8INF|1|2|U|1201
8INF|1|2|C|1202
8INF|1|2|G|1203

Current chains

Chain 2
28S rRNA

Nearby chains

Chain b
60S ribosomal protein L18a
Chain c
60S ribosomal protein L21

Coloring options:


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