3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUG*C(A2M)GA
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_076 not in the Motif Atlas
Geometric match to IL_4EYA_010
Geometric discrepancy: 0.2978
The information below is about IL_4EYA_010
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_51479.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

8INF|1|2|U|1861
8INF|1|2|U|1862
8INF|1|2|U|1863
8INF|1|2|G|1864
*
8INF|1|2|C|1870
8INF|1|2|A2M|1871
8INF|1|2|G|1872
8INF|1|2|A|1873

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 5
5S ribosomal RNA; 5S rRNA
Chain C
60S ribosomal protein L29
Chain R
Translation machinery-associated protein 16
Chain f
Protein SDA1 homolog

Coloring options:


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