3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
Length
28 nucleotides
Bulged bases
8INF|1|2|C|1935, 8INF|1|2|A|2041, 8INF|1|2|U|2044, 8INF|1|2|G|2049
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_082 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.2172
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8INF|1|2|G|1933
8INF|1|2|A|1934
8INF|1|2|C|1935
8INF|1|2|C|1936
8INF|1|2|C|1937
8INF|1|2|C|1938
8INF|1|2|A|1939
8INF|1|2|G|1940
8INF|1|2|A|1941
8INF|1|2|A|1942
8INF|1|2|A|1943
8INF|1|2|A|1944
*
8INF|1|2|U|2038
8INF|1|2|G|2039
8INF|1|2|A|2040
8INF|1|2|A|2041
8INF|1|2|A|2042
8INF|1|2|A|2043
8INF|1|2|U|2044
8INF|1|2|G|2045
8INF|1|2|G|2046
8INF|1|2|A|2047
8INF|1|2|U|2048
8INF|1|2|G|2049
8INF|1|2|OMG|2050
8INF|1|2|C|2051
8INF|1|2|G|2052
8INF|1|2|C|2053

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 5
5S ribosomal RNA; 5S rRNA
Chain B
60S ribosomal protein L3
Chain T
Leydig cell tumor 10 kDa protein homolog
Chain V
60S ribosomal protein L13a
Chain n
60S ribosomal protein L35a
Chain s
Ribosome biogenesis protein NSA2 homolog

Coloring options:


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