IL_8INF_095

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8INF|1|2|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_095 not in the Motif Atlas

Geometric match to IL_5J7L_041

Geometric discrepancy: 0.3995

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8INF|1|2|U|2415
8INF|1|2|G|2416
8INF|1|2|A|2417
8INF|1|2|A|2418
8INF|1|2|C|2419
*
8INF|1|2|G|2427
8INF|1|2|A|2428
8INF|1|2|A|2429

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain P

60S ribosomal protein L39

Chain Y

60S ribosomal protein L17

Chain a

60S ribosomal protein L19