3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
8INF|1|2|A|2512, 8INF|1|2|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_096 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.0984
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8INF|1|2|C|2446
8INF|1|2|U|2447
8INF|1|2|G|2448
8INF|1|2|A|2449
8INF|1|2|G|2450
*
8INF|1|2|C|2509
8INF|1|2|G|2510
8INF|1|2|A|2511
8INF|1|2|A|2512
8INF|1|2|A|2513
8INF|1|2|G|2514

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain F
60S ribosomal protein L34
Chain M
60S ribosomal protein L37
Chain P
60S ribosomal protein L39
Chain m
60S ribosomal protein L8
Chain v
Pescadillo homolog

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2781 s
Application loaded.