IL_8INF_117

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8INF|1|2|A|3663, 8INF|1|2|U|3679, 8INF|1|2|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_117 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0843

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8INF|1|2|C|3660
8INF|1|2|G|3661
8INF|1|2|A|3662
8INF|1|2|A|3663
8INF|1|2|G|3664
8INF|1|2|G|3665
*
8INF|1|2|U|3677
8INF|1|2|G|3678
8INF|1|2|U|3679
8INF|1|2|U|3680
8INF|1|2|G|3681
8INF|1|2|A|3682
8INF|1|2|C|3683
8INF|1|2|G|3684

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain f

Protein SDA1 homolog

Chain m

60S ribosomal protein L8