IL_8INF_122

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(A2M)A*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_122 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1155

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8INF|1|2|G|3722
8INF|1|2|A2M|3723
8INF|1|2|A|3724
*
8INF|1|2|U|3729
8INF|1|2|U|3730
8INF|1|2|C|3731

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain W

60S ribosomal protein L36a

Chain w

Ribosome biogenesis protein NOP53